Code Grand Rounds

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pubmed_5

Cell ID: 8839

approved

{"delta":{"ops":[{"attributes":{"bold":true},"insert":"Scrape PubMed To Fastrack Literature Searches"},{"attributes":{"header":1},"insert":"\n"},{"insert":"Introduction"},{"attributes":{"header":2},"insert":"\n"},{"insert":"Whether a medical student tasked with doing literature review or a scientist interested in particular topics, PubMed is, of course, a useful resource for finding research articles. Rather than manually interacting with the PubMed website, a Python script could be used to query the PubMed databases more quickly, providing a powerful way to improve research capabilities.\n\nIn this project, we will use `Biopython` and specifically the `Entrez` module. PubMed is maintained by the National Center for Biotechnology Information (NCBI). NCBI maintains an application programming interface, an API, for technology-savvy scientists to interact with using Python and other computer science languages. During this module, we will be 'talking' with this API via our Python code.\n\nThis is definitely a hard module compared to the other lessons in this module. However, it is important to practice reading more complex code, and as your projects get harder the fruits of your labor get better!\n"}]},"html":"<h1><strong>Scrape PubMed To Fastrack Literature Searches</strong></h1><h2 id=\"section-0\">Introduction</h2><p>Whether a medical student tasked with doing literature review or a scientist interested in particular topics, PubMed is, of course, a useful resource for finding research articles. Rather than manually interacting with the PubMed website, a Python script could be used to query the PubMed databases more quickly, providing a powerful way to improve research capabilities.</p><p><br></p><p>In this project, we will use `Biopython` and specifically the `Entrez` module. PubMed is maintained by the National Center for Biotechnology Information (NCBI). NCBI maintains an application programming interface, an API, for technology-savvy scientists to interact with using Python and other computer science languages. During this module, we will be 'talking' with this API via our Python code.</p><p><br></p><p>This is definitely a hard module compared to the other lessons in this module. However, it is important to practice reading more complex code, and as your projects get harder the fruits of your labor get better!</p>"}

hughadmin posted on Sept. 5, 2024, 4:14 p.m.

insert space

hughadmin posted on Sept. 5, 2024, 4:17 p.m.

annoyingly space not appearing here as diff

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